<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
<title>PDBe Molstar - Helper functions</title>
<!-- Molstar CSS & JS -->
<link rel="stylesheet" type="text/css" href="https://www.ebi.ac.uk/pdbe/pdb-component-library/css/pdbe-molstar-3.1.2.css">
<script type="text/javascript" src="https://www.ebi.ac.uk/pdbe/pdb-component-library/js/pdbe-molstar-plugin-3.1.2.js"></script>
<style>
* {
margin: 0;
padding: 0;
box-sizing: border-box;
}
.msp-plugin ::-webkit-scrollbar-thumb {
background-color: #474748 !important;
}
.viewerSection {
padding-top: 40px;
}
.controlsSection {
width: 200px;
float: left;
padding: 40px 0 0 0;
margin-right: 30px;
}
.controlBox {
border: 1px solid lightgray;
padding: 10px;
margin-bottom: 20px;
}
#myViewer{
float:left;
width:300px;
height: 300px;
position:relative;
}
</style>
</head>
<body>
<div class="controlsSection">
<h3>Canvas/ layout methods</h3>
<div class="controlBox">
<strong>Set Background</strong><br>
<button onclick="viewerInstance.canvas.setBgColor({r:255, g:255, b:255})">White</button>
<button onclick="viewerInstance.canvas.setBgColor({r:0, g:0, b:0})">Black</button><br><br>
<strong>Toggle controls menu</strong><br>
<button onclick="viewerInstance.canvas.toggleControls(false)">Hide</button>
<button onclick="viewerInstance.canvas.toggleControls(true)">Show</button>
<button onclick="viewerInstance.canvas.toggleControls()">Toggle</button><br><br>
<strong>Toggle Fullscreen</strong><br>
<button onclick="viewerInstance.canvas.toggleExpanded(true)">Show Fullscreen</button><br>
</div>
<h3>Visual Methods</h3>
<div class="controlBox">
<strong>Change representation visibility</strong><br>
<button onclick="viewerInstance.visual.visibility({water:false})">Hide Water Visual</button>
<button onclick="viewerInstance.visual.visibility({water:true})">Show Water Visual</button><br><br>
<strong>Toggle Spin</strong><br>
<button onclick="viewerInstance.visual.toggleSpin(true)">Rotate</button>
<button onclick="viewerInstance.visual.toggleSpin(false)">Stop</button>
<button onclick="viewerInstance.visual.toggleSpin()">Toggle</button><br><br>
<strong>Focus</strong><br>
<button onclick="viewerInstance.visual.focus([{struct_asym_id: 'A', start_residue_number: 14, end_residue_number: 18}])">Focus on Chain A:14-18</button><br><br>
<strong>Highlight</strong><br>
<button onclick="viewerInstance.visual.highlight({ data: [{ struct_asym_id: 'A', start_residue_number: 14, end_residue_number: 18 }], color:{r:255,g:255,b:0} })">Highlight Chain A:14-18</button>
<button onclick="viewerInstance.visual.clearHighlight()">Clear Highlight</button><br><br>
<strong>Selection</strong><br>
<button onclick="viewerInstance.visual.select({ data: [{ struct_asym_id: 'B', start_residue_number: 1, end_residue_number: 6, color:{r:255,g:255,b:0}, focus: true }]})">Select & Focus on Chain B:1-6</button><br><br>
<button onclick="
var selectSections = [
{
struct_asym_id: 'B',
start_residue_number: 8,
end_residue_number: 10,
color:{r:255,g:0,b:255},
sideChain: true
},
{
struct_asym_id: 'B',
start_residue_number: 2,
end_residue_number: 5,
color:{r:255,g:0,b:0}
}
]
viewerInstance.visual.select({ data: selectSections, nonSelectedColor: {r:255,g:255,b:255}})">Select on Chain B:2-5 & Chain B:8-10</button><br><br>
<button onclick="viewerInstance.visual.select({ data: [{struct_asym_id: 'B', color:{r:255,g:255,b:0}, focus:true}], nonSelectedColor: {r:255,g:255,b:255} })">Select & Focus on Chain B</button><br><br>
<button onclick="viewerInstance.visual.clearSelection()">Clear Selection</button><br><br>
<strong>Set highlight / selection colour</strong><br>
<button onclick="viewerInstance.visual.setColor({ highlight: {r:255,g:255,b:0} })">Yellow highlight</button>
<button onclick="viewerInstance.visual.reset({ highlightColor: true })">Reset</button><br><br>
<button onclick="viewerInstance.visual.setColor({ select: {r:255,g:0,b:0} })">Red selection</button>
<button onclick="viewerInstance.visual.reset({ selectColor: true })">Reset</button><br><br>
<strong>Reset Visual</strong><br>
<button onclick="viewerInstance.visual.reset({ camera: true })">Camera</button>
<button onclick="viewerInstance.visual.reset({ theme: true })">Theme</button>
<button onclick="viewerInstance.visual.reset({ camera: true, theme: true })">Camera & Theme</button><br><br>
<strong>Update data</strong><br>
<button onclick="viewerInstance.visual.update({moleculeId: '1cbs'})">Update data to create new visual</button><br>
</div>
</div>
<div class="viewerSection">
<h4>PDBe Mol* JS Plugin Demo</h4>
<!-- Molstar container -->
<div id="myViewer"></div>
</div>
<script>
//Create plugin instance
var viewerInstance = new PDBeMolstarPlugin();
//Set options (Checkout available options list in the documentation)
var options = {
moleculeId: '2nnu',
hideControls: true
}
//Get element from HTML/Template to place the viewer
var viewerContainer = document.getElementById('myViewer');
//Call render method to display the 3D view
viewerInstance.render(viewerContainer, options);
</script>
</body>
</html>